J3_4V9O_110

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

4V9O|1|DA|U|1086

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9O_110 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.2098

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

4V9O|1|DA|U|1073
4V9O|1|DA|G|1074
*
4V9O|1|DA|U|1083
4V9O|1|DA|G|1084
4V9O|1|DA|U|1085
4V9O|1|DA|U|1086
4V9O|1|DA|G|1087
*
4V9O|1|DA|C|1098
4V9O|1|DA|G|1099
4V9O|1|DA|C|1100
4V9O|1|DA|A|1101
4V9O|1|DA|A|1102

Current chains

Chain DA

16S rRNA

Nearby chains

Chain DB

30S ribosomal protein S2

Chain DE

30S ribosomal protein S5