J3_4V9P_018

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

4V9P|1|BA|U|1240, 4V9P|1|BA|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9P_018 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1378

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V9P|1|BA|C|1237
4V9P|1|BA|A|1238
4V9P|1|BA|A|1239
4V9P|1|BA|U|1240
4V9P|1|BA|G|1241
*
4V9P|1|BA|C|1296
4V9P|1|BA|G|1297
4V9P|1|BA|U|1298
4V9P|1|BA|A|1299
4V9P|1|BA|G|1300
4V9P|1|BA|U|1301
4V9P|1|BA|C|1302
4V9P|1|BA|C|1303
*
4V9P|1|BA|G|1334
4V9P|1|BA|U|1335
4V9P|1|BA|C|1336
4V9P|1|BA|G|1337

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BG

30S ribosomal protein S7

Chain BM

30S ribosomal protein S13