J3_4V9P_119

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9P_119 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.1814

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

4V9P|1|FA|G|46
4V9P|1|FA|C|47
*
4V9P|1|FA|G|361
4V9P|1|FA|G|362
4V9P|1|FA|A|363
4V9P|1|FA|A|364
4V9P|1|FA|U|365
4V9P|1|FA|A|366
4V9P|1|FA|U|367
*
4V9P|1|FA|A|393
4V9P|1|FA|G|394
4V9P|1|FA|C|395

Current chains

Chain FA

16S rRNA

Nearby chains

Chain FL

30S ribosomal protein S12

Chain FP

30S ribosomal protein S16

Chain FV

elongation factor G