J3_4V9Q_007

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4V9Q|1|AA|A|2518, 4V9Q|1|AA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9Q_007 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.1064

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4V9Q|1|AA|C|2517
4V9Q|1|AA|A|2518
4V9Q|1|AA|U|2519
4V9Q|1|AA|C|2520
*
4V9Q|1|AA|G|2545
4V9Q|1|AA|U|2546
4V9Q|1|AA|U|2547
*
4V9Q|1|AA|A|2561
4V9Q|1|AA|U|2562
4V9Q|1|AA|U|2563
4V9Q|1|AA|A|2564
4V9Q|1|AA|A|2565
4V9Q|1|AA|A|2566
4V9Q|1|AA|G|2567

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AK

50S ribosomal protein L14