J3_4V9Q_013

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9Q_013 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1844

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4V9Q|1|BA|C|990
4V9Q|1|BA|U|991
4V9Q|1|BA|U|992
4V9Q|1|BA|G|993
*
4V9Q|1|BA|C|1045
4V9Q|1|BA|A|1046
4V9Q|1|BA|G|1047
*
4V9Q|1|BA|C|1210
4V9Q|1|BA|U|1211
4V9Q|1|BA|U|1212
4V9Q|1|BA|A|1213
4V9Q|1|BA|C|1214
4V9Q|1|BA|G|1215

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BN

30S ribosomal protein S14

Chain CA

Large subunit ribosomal RNA; LSU rRNA