J3_4V9Q_017

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4V9Q|1|BA|U|1240, 4V9Q|1|BA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9Q_017 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1968

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V9Q|1|BA|C|1237
4V9Q|1|BA|A|1238
4V9Q|1|BA|A|1239
4V9Q|1|BA|U|1240
4V9Q|1|BA|G|1241
*
4V9Q|1|BA|C|1296
4V9Q|1|BA|C|1297
4V9Q|1|BA|C|1298
4V9Q|1|BA|A|1299
4V9Q|1|BA|G|1300
4V9Q|1|BA|U|1301
4V9Q|1|BA|U|1302
4V9Q|1|BA|C|1303
*
4V9Q|1|BA|G|1334
4V9Q|1|BA|C|1335
4V9Q|1|BA|C|1336
4V9Q|1|BA|G|1337

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BG

30S ribosomal protein S7

Chain BM

30S ribosomal protein S13

Chain BU

30S ribosomal protein Thx