J3_4V9Q_018

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V9Q|1|CA|G|686, 4V9Q|1|CA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9Q_018 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.068

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V9Q|1|CA|C|683
4V9Q|1|CA|G|684
4V9Q|1|CA|A|685
4V9Q|1|CA|G|686
4V9Q|1|CA|C|687
4V9Q|1|CA|U|688
4V9Q|1|CA|A|689
*
4V9Q|1|CA|U|773
4V9Q|1|CA|A|774
4V9Q|1|CA|G|775
*
4V9Q|1|CA|C|791
4V9Q|1|CA|G|792
4V9Q|1|CA|A|793
4V9Q|1|CA|G|794

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C4

50S ribosomal protein L34

Chain CD

50S ribosomal protein L2