J3_4V9Q_040

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4V9Q|1|AA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9Q_040 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0705

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V9Q|1|AA|C|297
4V9Q|1|AA|G|298
4V9Q|1|AA|A|299
4V9Q|1|AA|A|300
4V9Q|1|AA|G|301
*
4V9Q|1|AA|C|316
4V9Q|1|AA|G|317
4V9Q|1|AA|C|318
4V9Q|1|AA|C|319
4V9Q|1|AA|A|320
4V9Q|1|AA|G|321
4V9Q|1|AA|A|322
4V9Q|1|AA|G|323
4V9Q|1|AA|A|324
4V9Q|1|AA|G|325
*
4V9Q|1|AA|C|337
4V9Q|1|AA|G|338
4V9Q|1|AA|U|339
4V9Q|1|AA|A|340
4V9Q|1|AA|G|341

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AU

50S ribosomal protein L24