J3_4V9Q_056

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V9Q|1|CA|U|504, 4V9Q|1|CA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9Q_056 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.246

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V9Q|1|CA|G|30
4V9Q|1|CA|C|31
*
4V9Q|1|CA|G|474
4V9Q|1|CA|U|475
4V9Q|1|CA|G|476
4V9Q|1|CA|A|477
4V9Q|1|CA|A|478
4V9Q|1|CA|A|479
4V9Q|1|CA|A|480
4V9Q|1|CA|G|481
4V9Q|1|CA|A|482
4V9Q|1|CA|A|483
4V9Q|1|CA|C|484
*
4V9Q|1|CA|G|496
4V9Q|1|CA|A|497
4V9Q|1|CA|G|498
4V9Q|1|CA|U|499
4V9Q|1|CA|G|500
4V9Q|1|CA|A|501
4V9Q|1|CA|A|502
4V9Q|1|CA|A|503
4V9Q|1|CA|U|504
4V9Q|1|CA|A|505
4V9Q|1|CA|G|506
4V9Q|1|CA|A|507
4V9Q|1|CA|G|508
4V9Q|1|CA|C|509
4V9Q|1|CA|C|510

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CQ

50S ribosomal protein L20

Chain CS

50S ribosomal protein L22

Chain CU

50S ribosomal protein L24