J3_4V9Q_062

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9Q_062 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0721

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V9Q|1|CA|G|1424
4V9Q|1|CA|G|1425
4V9Q|1|CA|G|1426
4V9Q|1|CA|A|1427
4V9Q|1|CA|C|1428
4V9Q|1|CA|G|1429
*
4V9Q|1|CA|C|1564
4V9Q|1|CA|C|1565
*
4V9Q|1|CA|G|1568
4V9Q|1|CA|A|1569
4V9Q|1|CA|A|1570
4V9Q|1|CA|A|1571
4V9Q|1|CA|A|1572
4V9Q|1|CA|G|1573
4V9Q|1|CA|C|1574

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CD

50S ribosomal protein L2