J3_4V9Q_065
3D structure
- PDB id
- 4V9Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CCAUAG*CG*UCG
- Length
- 11 nucleotides
- Bulged bases
- 4V9Q|1|CB|U|14, 4V9Q|1|CB|C|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V9Q_065 not in the Motif Atlas
- Homologous match to J3_9DFE_020
- Geometric discrepancy: 0.1919
- The information below is about J3_9DFE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12003.2
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V9Q|1|CB|C|11
4V9Q|1|CB|C|12
4V9Q|1|CB|A|13
4V9Q|1|CB|U|14
4V9Q|1|CB|A|15
4V9Q|1|CB|G|16
*
4V9Q|1|CB|C|68
4V9Q|1|CB|G|69
*
4V9Q|1|CB|U|107
4V9Q|1|CB|C|108
4V9Q|1|CB|G|109
Current chains
- Chain CB
- 5S ribosomal RNA
Nearby chains
- Chain CA
- Large subunit ribosomal RNA; LSU rRNA
- Chain CO
- 50S ribosomal protein L18
- Chain CV
- 50S ribosomal protein L25
- Chain CW
- 50S ribosomal protein L27
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