J3_4V9R_045

3D structure

PDB id

4V9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

4V9R|1|BA|U|288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9R_045 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.0689

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V9R|1|BA|U|258
4V9R|1|BA|A|259
4V9R|1|BA|A|260
4V9R|1|BA|A|261
4V9R|1|BA|C|262
*
4V9R|1|BA|G|282
4V9R|1|BA|G|283
4V9R|1|BA|G|284
4V9R|1|BA|U|285
4V9R|1|BA|C|286
4V9R|1|BA|G|287
4V9R|1|BA|U|288
4V9R|1|BA|G|289
*
4V9R|1|BA|C|396
4V9R|1|BA|G|397

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BI

50S Ribosomal Protein L9