J3_4V9R_046

3D structure

PDB id

4V9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4V9R|1|BA|G|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9R_046 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0585

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4V9R|1|BA|C|321
4V9R|1|BA|G|322
4V9R|1|BA|A|323
4V9R|1|BA|A|324
4V9R|1|BA|G|325
*
4V9R|1|BA|C|340
4V9R|1|BA|G|341
4V9R|1|BA|C|342
4V9R|1|BA|C|343
4V9R|1|BA|A|344
4V9R|1|BA|G|345
4V9R|1|BA|A|346
4V9R|1|BA|G|347
4V9R|1|BA|A|348
4V9R|1|BA|G|349
*
4V9R|1|BA|C|361
4V9R|1|BA|G|362
4V9R|1|BA|U|363
4V9R|1|BA|A|364
4V9R|1|BA|G|365

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BF

50S Ribosomal Protein L4

Chain BY

50S Ribosomal Protein L24