J3_4V9R_047

3D structure

PDB id

4V9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9R_047 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.0717

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

4V9R|1|BA|G|1390
4V9R|1|BA|C|1391
4V9R|1|BA|G|1392
4V9R|1|BA|G|1393
4V9R|1|BA|G|1394
4V9R|1|BA|A|1395
4V9R|1|BA|C|1396
*
4V9R|1|BA|G|1427
4V9R|1|BA|G|1428
4V9R|1|BA|C|1429
4V9R|1|BA|A|1430
4V9R|1|BA|G|1431
*
4V9R|1|BA|C|1448
4V9R|1|BA|C|1449

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BX

50S Ribosomal Protein L23