J3_4V9R_066

3D structure

PDB id

4V9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4V9R|1|DA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9R_066 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.059

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4V9R|1|DA|C|297
4V9R|1|DA|G|298
4V9R|1|DA|A|299
4V9R|1|DA|A|300
4V9R|1|DA|G|301
*
4V9R|1|DA|C|316
4V9R|1|DA|G|317
4V9R|1|DA|C|318
4V9R|1|DA|C|319
4V9R|1|DA|A|320
4V9R|1|DA|G|321
4V9R|1|DA|A|322
4V9R|1|DA|G|323
4V9R|1|DA|A|324
4V9R|1|DA|G|325
*
4V9R|1|DA|C|337
4V9R|1|DA|G|338
4V9R|1|DA|U|339
4V9R|1|DA|A|340
4V9R|1|DA|G|341

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DF

50S Ribosomal Protein L4

Chain DY

50S Ribosomal Protein L24