J3_4V9S_010

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V9S|1|BA|G|733, 4V9S|1|BA|G|839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9S_010 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0522

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V9S|1|BA|C|730
4V9S|1|BA|G|731
4V9S|1|BA|A|732
4V9S|1|BA|G|733
4V9S|1|BA|C|734
4V9S|1|BA|U|735
4V9S|1|BA|A|736
*
4V9S|1|BA|U|820
4V9S|1|BA|A|821
4V9S|1|BA|G|822
*
4V9S|1|BA|C|838
4V9S|1|BA|G|839
4V9S|1|BA|A|840
4V9S|1|BA|G|841

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B7

50S Ribosomal Protein L34

Chain BD

50S Ribosomal Protein L2