J3_4V9S_014

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9S_014 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0519

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4V9S|1|BA|U|2113
4V9S|1|BA|U|2114
4V9S|1|BA|G|2115
*
4V9S|1|BA|C|2218
4V9S|1|BA|U|2219
4V9S|1|BA|A|2220
4V9S|1|BA|A|2221
4V9S|1|BA|C|2222
*
4V9S|1|BA|G|2235
4V9S|1|BA|G|2236
4V9S|1|BA|A|2237
4V9S|1|BA|C|2238
4V9S|1|BA|A|2239
4V9S|1|BA|G|2240

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S Ribosomal Protein L28

Chain BD

50S Ribosomal Protein L2

Chain BI

50S Ribosomal Protein L9