J3_4V9S_017

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

4V9S|1|BA|A|2803

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9S_017 not in the Motif Atlas

Homologous match to J3_7RQB_013

Geometric discrepancy: 0.086

The information below is about J3_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24416.1

Basepair signature

cWW-F-F-tWH-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V9S|1|BA|C|2802
4V9S|1|BA|A|2803
4V9S|1|BA|C|2804
*
4V9S|1|BA|G|2816
4V9S|1|BA|G|2817
4V9S|1|BA|U|2818
4V9S|1|BA|A|2819
4V9S|1|BA|A|2820
4V9S|1|BA|G|2821
*
4V9S|1|BA|C|2899
4V9S|1|BA|G|2900
4V9S|1|BA|A|2901
4V9S|1|BA|G|2902
4V9S|1|BA|G|2903

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BE

50S Ribosomal Protein L3