J3_4V9S_044

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

4V9S|1|BA|U|288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9S_044 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.0713

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V9S|1|BA|U|258
4V9S|1|BA|A|259
4V9S|1|BA|A|260
4V9S|1|BA|A|261
4V9S|1|BA|C|262
*
4V9S|1|BA|G|282
4V9S|1|BA|G|283
4V9S|1|BA|G|284
4V9S|1|BA|U|285
4V9S|1|BA|C|286
4V9S|1|BA|G|287
4V9S|1|BA|U|288
4V9S|1|BA|G|289
*
4V9S|1|BA|C|396
4V9S|1|BA|G|397

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BI

50S Ribosomal Protein L9