J3_4V9S_052

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4V9S|1|CA|C|48, 4V9S|1|CA|A|50, 4V9S|1|CA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9S_052 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0731

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V9S|1|CA|G|46
4V9S|1|CA|C|47
4V9S|1|CA|C|48
4V9S|1|CA|U|49
4V9S|1|CA|A|50
4V9S|1|CA|A|51
4V9S|1|CA|G|52
*
4V9S|1|CA|U|359
4V9S|1|CA|A|360
4V9S|1|CA|G|361
4V9S|1|CA|G|362
4V9S|1|CA|A|363
4V9S|1|CA|A|364
4V9S|1|CA|U|365
4V9S|1|CA|C|366
4V9S|1|CA|U|367
*
4V9S|1|CA|A|393
4V9S|1|CA|G|394
4V9S|1|CA|C|395

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CL

30S Ribosomal Protein S12

Chain CP

30S Ribosomal Protein S16

Chain CW

GE82832