J3_4W21_002

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

4W21|1|5|A|1534, 4W21|1|5|G|1641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W21_002 not in the Motif Atlas

Geometric match to J3_5J7L_038

Geometric discrepancy: 0.1169

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4W21|1|5|U|1531
4W21|1|5|G|1532
4W21|1|5|A|1533
4W21|1|5|A|1534
4W21|1|5|C|1535
4W21|1|5|U|1536
4W21|1|5|A|1537
*
4W21|1|5|U|1622
4W21|1|5|A|1623
4W21|1|5|G|1624
*
4W21|1|5|C|1640
4W21|1|5|G|1641
4W21|1|5|A|1642
4W21|1|5|A|1643

Current chains

Chain 5

28S ribosomal RNA

Nearby chains