J3_4W21_006

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAG*CCAUAUCC*GGUC

Length

16 nucleotides

Bulged bases

4W21|1|5|U|2788, 4W21|1|5|A|2789, 4W21|1|5|U|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|G|2402
4W21|1|5|A|2403
4W21|1|5|A|2404
4W21|1|5|G|2405
*
4W21|1|5|C|2785
4W21|1|5|C|2786
4W21|1|5|A|2787
4W21|1|5|U|2788
4W21|1|5|A|2789
4W21|1|5|U|2790
4W21|1|5|C|2791
4W21|1|5|C|2792
*
4W21|1|5|G|2799
4W21|1|5|G|2800
4W21|1|5|U|2801
4W21|1|5|C|2802

Current chains

Chain 5

28S ribosomal RNA

Nearby chains