J3_4W21_008

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGGG*UCGCUUCUGGCGCCAAG*CGAC

Length

26 nucleotides

Bulged bases

4W21|1|5|U|4117, 4W21|1|5|U|4118, 4W21|1|5|C|4119, 4W21|1|5|U|4120, 4W21|1|5|G|4121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|G|4091
4W21|1|5|G|4092
4W21|1|5|G|4093
4W21|1|5|G|4094
4W21|1|5|G|4095
*
4W21|1|5|U|4113
4W21|1|5|C|4114
4W21|1|5|G|4115
4W21|1|5|C|4116
4W21|1|5|U|4117
4W21|1|5|U|4118
4W21|1|5|C|4119
4W21|1|5|U|4120
4W21|1|5|G|4121
4W21|1|5|G|4122
4W21|1|5|C|4123
4W21|1|5|G|4124
4W21|1|5|C|4125
4W21|1|5|C|4126
4W21|1|5|A|4127
4W21|1|5|A|4128
4W21|1|5|G|4129
*
4W21|1|5|C|4155
4W21|1|5|G|4156
4W21|1|5|A|4157
4W21|1|5|C|4158

Current chains

Chain 5

28S ribosomal RNA

Nearby chains