J3_4W21_009

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

4W21|1|5|C|4990, 4W21|1|5|A|5061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|C|4970
4W21|1|5|A|4971
4W21|1|5|U|4972
*
4W21|1|5|G|4986
4W21|1|5|C|4987
4W21|1|5|U|4988
4W21|1|5|U|4989
4W21|1|5|C|4990
4W21|1|5|U|4991
*
4W21|1|5|A|5060
4W21|1|5|A|5061
4W21|1|5|G|5062
4W21|1|5|G|5063

Current chains

Chain 5

28S ribosomal RNA

Nearby chains