J3_4W21_011

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUAGUCAACAAGUAC*GGAAAG*CUCG

Length

27 nucleotides

Bulged bases

4W21|1|5|U|354, 4W21|1|5|A|362, 4W21|1|8|C|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W21_011 not in the Motif Atlas

Geometric match to J3_8CRE_004

Geometric discrepancy: 0.0987

The information below is about J3_8CRE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

4W21|1|5|C|351
4W21|1|5|G|352
4W21|1|5|A|353
4W21|1|5|U|354
4W21|1|5|A|355
4W21|1|5|G|356
4W21|1|5|U|357
4W21|1|5|C|358
4W21|1|5|A|359
4W21|1|5|A|360
4W21|1|5|C|361
4W21|1|5|A|362
4W21|1|5|A|363
4W21|1|5|G|364
4W21|1|5|U|365
4W21|1|5|A|366
4W21|1|5|C|367
*
4W21|1|5|G|374
4W21|1|5|G|375
4W21|1|5|A|376
4W21|1|5|A|377
4W21|1|5|A|378
4W21|1|5|G|379
*
4W21|1|8|C|21
4W21|1|8|U|22
4W21|1|8|C|23
4W21|1|8|G|24

Current chains

Chain 5

28S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains