J3_4W21_014

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCGACC*GAGGGAGCGAGACCCGUCGCCGCG*CGCACGGGGUCGGC

Length

44 nucleotides

Bulged bases

4W21|1|5|C|962, 4W21|1|5|G|965, 4W21|1|5|A|966, 4W21|1|5|G|1281, 4W21|1|5|G|1284, 4W21|1|5|G|1288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|G|708
4W21|1|5|C|709
4W21|1|5|G|710
4W21|1|5|A|711
4W21|1|5|C|712
4W21|1|5|C|713
*
4W21|1|5|G|955
4W21|1|5|A|956
4W21|1|5|G|957
4W21|1|5|G|958
4W21|1|5|G|959
4W21|1|5|A|960
4W21|1|5|G|961
4W21|1|5|C|962
4W21|1|5|G|963
4W21|1|5|A|964
4W21|1|5|G|965
4W21|1|5|A|966
4W21|1|5|C|967
4W21|1|5|C|968
4W21|1|5|C|969
4W21|1|5|G|970
4W21|1|5|U|971
4W21|1|5|C|972
4W21|1|5|G|973
4W21|1|5|C|974
4W21|1|5|C|975
4W21|1|5|G|976
4W21|1|5|C|977
4W21|1|5|G|978
*
4W21|1|5|C|1276
4W21|1|5|G|1277
4W21|1|5|C|1278
4W21|1|5|A|1279
4W21|1|5|C|1280
4W21|1|5|G|1281
4W21|1|5|G|1282
4W21|1|5|G|1283
4W21|1|5|G|1284
4W21|1|5|U|1285
4W21|1|5|C|1286
4W21|1|5|G|1287
4W21|1|5|G|1288
4W21|1|5|C|1289

Current chains

Chain 5

28S ribosomal RNA

Nearby chains