J3_4W21_017
3D structure
- PDB id
- 4W21 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAGAUGG*CGUUCCGAAGGG*CGGCCGAUC
- Length
- 28 nucleotides
- Bulged bases
- 4W21|1|5|C|2470, 4W21|1|5|A|2472, 4W21|1|5|G|2475
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4W21|1|5|G|2450
4W21|1|5|A|2451
4W21|1|5|G|2452
4W21|1|5|A|2453
4W21|1|5|U|2454
4W21|1|5|G|2455
4W21|1|5|G|2456
*
4W21|1|5|C|2465
4W21|1|5|G|2466
4W21|1|5|U|2467
4W21|1|5|U|2468
4W21|1|5|C|2469
4W21|1|5|C|2470
4W21|1|5|G|2471
4W21|1|5|A|2472
4W21|1|5|A|2473
4W21|1|5|G|2474
4W21|1|5|G|2475
4W21|1|5|G|2476
*
4W21|1|5|C|2501
4W21|1|5|G|2502
4W21|1|5|G|2503
4W21|1|5|C|2504
4W21|1|5|C|2505
4W21|1|5|G|2506
4W21|1|5|A|2507
4W21|1|5|U|2508
4W21|1|5|C|2509
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA
Coloring options: