J3_4W21_018

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAGAUGG*CCAGU*AGGGUGUAAAUCUC

Length

27 nucleotides

Bulged bases

4W21|1|5|C|2768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|G|2549
4W21|1|5|G|2550
4W21|1|5|A|2551
4W21|1|5|G|2552
4W21|1|5|A|2553
4W21|1|5|U|2554
4W21|1|5|G|2555
4W21|1|5|G|2556
*
4W21|1|5|C|2571
4W21|1|5|C|2572
4W21|1|5|A|2573
4W21|1|5|G|2574
4W21|1|5|U|2575
*
4W21|1|5|A|2757
4W21|1|5|G|2758
4W21|1|5|G|2759
4W21|1|5|G|2760
4W21|1|5|U|2761
4W21|1|5|G|2762
4W21|1|5|U|2763
4W21|1|5|A|2764
4W21|1|5|A|2765
4W21|1|5|A|2766
4W21|1|5|U|2767
4W21|1|5|C|2768
4W21|1|5|U|2769
4W21|1|5|C|2770

Current chains

Chain 5

28S ribosomal RNA

Nearby chains