J3_4W21_021

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAUCAUUG*CCAAGCGUU*ACUAAUA

Length

24 nucleotides

Bulged bases

4W21|1|5|A|4464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|U|4463
4W21|1|5|A|4464
4W21|1|5|U|4465
4W21|1|5|C|4466
4W21|1|5|A|4467
4W21|1|5|U|4468
4W21|1|5|U|4469
4W21|1|5|G|4470
*
4W21|1|5|C|4485
4W21|1|5|C|4486
4W21|1|5|A|4487
4W21|1|5|A|4488
4W21|1|5|G|4489
4W21|1|5|C|4490
4W21|1|5|G|4491
4W21|1|5|U|4492
4W21|1|5|U|4493
*
4W21|1|5|A|4507
4W21|1|5|C|4508
4W21|1|5|U|4509
4W21|1|5|A|4510
4W21|1|5|A|4511
4W21|1|5|U|4512
4W21|1|5|A|4513

Current chains

Chain 5

28S ribosomal RNA

Nearby chains