J3_4W21_022

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCGGUUG*CCUUCGUCCU*GUCACGCACGCCGUUCGUGG

Length

37 nucleotides

Bulged bases

4W21|1|5|C|4883, 4W21|1|5|C|4937, 4W21|1|5|C|4939, 4W21|1|5|G|4951

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|U|4748
4W21|1|5|C|4749
4W21|1|5|G|4750
4W21|1|5|G|4751
4W21|1|5|U|4752
4W21|1|5|U|4753
4W21|1|5|G|4754
*
4W21|1|5|C|4879
4W21|1|5|C|4880
4W21|1|5|U|4881
4W21|1|5|U|4882
4W21|1|5|C|4883
4W21|1|5|G|4884
4W21|1|5|U|4885
4W21|1|5|C|4886
4W21|1|5|C|4887
4W21|1|5|U|4888
*
4W21|1|5|G|4931
4W21|1|5|U|4932
4W21|1|5|C|4933
4W21|1|5|A|4934
4W21|1|5|C|4935
4W21|1|5|G|4936
4W21|1|5|C|4937
4W21|1|5|A|4938
4W21|1|5|C|4939
4W21|1|5|G|4941
4W21|1|5|C|4942
4W21|1|5|C|4944
4W21|1|5|G|4945
4W21|1|5|U|4946
4W21|1|5|U|4947
4W21|1|5|C|4948
4W21|1|5|G|4949
4W21|1|5|U|4950
4W21|1|5|G|4951
4W21|1|5|G|4952

Current chains

Chain 5

28S ribosomal RNA

Nearby chains