J3_4W21_023

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGCCAUAC*GG*UGCUG

Length

16 nucleotides

Bulged bases

4W21|1|7|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|7|C|6
4W21|1|7|G|7
4W21|1|7|G|8
4W21|1|7|C|9
4W21|1|7|C|10
4W21|1|7|A|11
4W21|1|7|U|12
4W21|1|7|A|13
4W21|1|7|C|14
*
4W21|1|7|G|65
4W21|1|7|G|66
*
4W21|1|7|U|109
4W21|1|7|G|110
4W21|1|7|C|111
4W21|1|7|U|112
4W21|1|7|G|113

Current chains

Chain 7

5S ribosomal RNA

Nearby chains

Chain 5

28S ribosomal RNA