J3_4W23_003
3D structure
- PDB id
- 4W23 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4W23_003 not in the Motif Atlas
- Geometric match to J3_8P9A_077
- Geometric discrepancy: 0.233
- The information below is about J3_8P9A_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.1
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4W23|1|2|U|1225
4W23|1|2|G|1226
4W23|1|2|G|1227
4W23|1|2|A|1228
*
4W23|1|2|U|1530
4W23|1|2|A|1531
4W23|1|2|C|1532
*
4W23|1|2|G|1638
4W23|1|2|G|1639
4W23|1|2|A|1640
4W23|1|2|A|1641
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- Ribosomal protein uS7
- Chain Q
- Ribosomal protein uS9
- Chain S
- Ribosomal protein uS13
- Chain T
- Ribosomal protein eS19
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