J3_4W23_004

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCUUAAUUU*GGGAAACCUCAC*GGCUGC

Length

27 nucleotides

Bulged bases

4W23|1|2|G|1256, 4W23|1|2|A|1258, 4W23|1|2|U|1519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W23|1|2|G|1236
4W23|1|2|C|1237
4W23|1|2|U|1238
4W23|1|2|U|1239
4W23|1|2|A|1240
4W23|1|2|A|1241
4W23|1|2|U|1242
4W23|1|2|U|1243
4W23|1|2|U|1244
*
4W23|1|2|G|1255
4W23|1|2|G|1256
4W23|1|2|G|1257
4W23|1|2|A|1258
4W23|1|2|A|1259
4W23|1|2|A|1260
4W23|1|2|C|1261
4W23|1|2|C|1262
4W23|1|2|U|1263
4W23|1|2|C|1264
4W23|1|2|A|1265
4W23|1|2|C|1266
*
4W23|1|2|G|1516
4W23|1|2|G|1517
4W23|1|2|C|1518
4W23|1|2|U|1519
4W23|1|2|G|1520
4W23|1|2|C|1521

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

Ribosomal protein uS19

Chain S

Ribosomal protein uS13

Chain U

Ribosomal protein uS10

Chain d

Ribosomal protein uS14

Chain f

Ribosomal protein eS31