J3_9H3G_037

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

C(PSU)UAAUU(PSU)*GGGGAAACU(PSU)AC*GGCCG

Length

25 nucleotides

Bulged bases

9H3G|1|h1|G|1200, 9H3G|1|h1|G|1202, 9H3G|1|h1|A|1204

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H3G|1|h1|C|1181
9H3G|1|h1|PSU|1182
9H3G|1|h1|U|1183
9H3G|1|h1|A|1184
9H3G|1|h1|A|1185
9H3G|1|h1|U|1186
9H3G|1|h1|U|1187
9H3G|1|h1|PSU|1188
*
9H3G|1|h1|G|1199
9H3G|1|h1|G|1200
9H3G|1|h1|G|1201
9H3G|1|h1|G|1202
9H3G|1|h1|A|1203
9H3G|1|h1|A|1204
9H3G|1|h1|A|1205
9H3G|1|h1|C|1206
9H3G|1|h1|U|1207
9H3G|1|h1|PSU|1208
9H3G|1|h1|A|1209
9H3G|1|h1|C|1210
*
9H3G|1|h1|G|1457
9H3G|1|h1|G|1458
9H3G|1|h1|C|1459
9H3G|1|h1|C|1460
9H3G|1|h1|G|1461

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain Ba

Small ribosomal subunit protein uS10y

Chain Ca

Small ribosomal subunit protein uS14z/uS14y/uS14x

Chain Wa

Small ribosomal subunit protein uS13z/uS13y/uS13x

Chain Ya

Small ribosomal subunit protein uS19y

Chain i2

Transfer RNA; tRNA