3D structure

PDB id
4W23 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UCUUAG*CGAGAC*GCAAUA
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4W23|1|2|U|1340
4W23|1|2|C|1341
4W23|1|2|U|1342
4W23|1|2|U|1343
4W23|1|2|A|1344
4W23|1|2|G|1345
*
4W23|1|2|C|1384
4W23|1|2|G|1385
4W23|1|2|A|1386
4W23|1|2|G|1387
4W23|1|2|A|1388
4W23|1|2|C|1389
*
4W23|1|2|G|1481
4W23|1|2|C|1482
4W23|1|2|A|1483
4W23|1|2|A|1484
4W23|1|2|U|1485
4W23|1|2|A|1486

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain C
Ribosomal protein uS5
Chain D
Ribosomal protein uS3
Chain Q
Ribosomal protein uS9
Chain R
Ribosomal protein eS17
Chain U
Ribosomal protein uS10
Chain d
Ribosomal protein uS14

Coloring options:

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