J3_4W29_028

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

AGGA*UUUAAAG*CACU

Length

15 nucleotides

Bulged bases

4W29|1|DA|U|1083

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W29_028 not in the Motif Atlas

Geometric match to J3_8VTW_042

Geometric discrepancy: 0.38

The information below is about J3_8VTW_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46457.1

Basepair signature

cWW-F-F-F-F-cSS-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

4W29|1|DA|A|1054
4W29|1|DA|G|1055
4W29|1|DA|G|1056
4W29|1|DA|A|1057
*
4W29|1|DA|U|1081
4W29|1|DA|U|1082
4W29|1|DA|U|1083
4W29|1|DA|A|1084
4W29|1|DA|A|1085
4W29|1|DA|A|1086
4W29|1|DA|G|1087
*
4W29|1|DA|C|1102
4W29|1|DA|A|1103
4W29|1|DA|C|1104
4W29|1|DA|U|1105

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DJ

50S ribosomal protein l10

Chain DK

50S ribosomal protein L11