J3_4W29_035

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCCUAAG*UAGGAAUCUUC*GAGC

Length

22 nucleotides

Bulged bases

4W29|1|AA|C|48, 4W29|1|AA|A|50, 4W29|1|AA|A|51, 4W29|1|AA|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W29|1|AA|G|46
4W29|1|AA|C|47
4W29|1|AA|C|48
4W29|1|AA|U|49
4W29|1|AA|A|50
4W29|1|AA|A|51
4W29|1|AA|G|52
*
4W29|1|AA|U|359
4W29|1|AA|A|360
4W29|1|AA|G|361
4W29|1|AA|G|362
4W29|1|AA|A|363
4W29|1|AA|A|364
4W29|1|AA|U|365
4W29|1|AA|C|366
4W29|1|AA|U|367
4W29|1|AA|U|368
4W29|1|AA|C|369
*
4W29|1|AA|G|392
4W29|1|AA|A|393
4W29|1|AA|G|394
4W29|1|AA|C|395

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16

Chain AY

Elongation factor G