J3_4W29_040
3D structure
- PDB id
- 4W29 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 4W29|1|AA|U|1212, 4W29|1|AA|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4W29_040 not in the Motif Atlas
- Homologous match to J3_5J7L_053
- Geometric discrepancy: 0.2449
- The information below is about J3_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.2
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4W29|1|AA|C|990
4W29|1|AA|U|991
4W29|1|AA|U|992
4W29|1|AA|G|993
4W29|1|AA|A|994
4W29|1|AA|C|995
4W29|1|AA|A|996
4W29|1|AA|U|997
*
4W29|1|AA|A|1044
4W29|1|AA|C|1045
4W29|1|AA|A|1046
4W29|1|AA|G|1047
*
4W29|1|AA|C|1210
4W29|1|AA|U|1211
4W29|1|AA|U|1212
4W29|1|AA|A|1213
4W29|1|AA|C|1214
4W29|1|AA|G|1215
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AN
- 30S ribosomal protein S14 type Z
- Chain AY
- Elongation factor G
Coloring options: