J3_4W29_050

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W29_050 not in the Motif Atlas

Homologous match to J3_4WF9_017

Geometric discrepancy: 0.1841

The information below is about J3_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4W29|1|BA|G|1424
4W29|1|BA|G|1425
4W29|1|BA|G|1426
4W29|1|BA|A|1427
4W29|1|BA|C|1428
4W29|1|BA|G|1429
*
4W29|1|BA|C|1564
4W29|1|BA|C|1565
*
4W29|1|BA|G|1568
4W29|1|BA|A|1569
4W29|1|BA|A|1570
4W29|1|BA|A|1571
4W29|1|BA|A|1572
4W29|1|BA|G|1573
4W29|1|BA|C|1574

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L2