3D structure

PDB id
4W29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
GUGGA*UAC*GGAAU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4W29|1|AA|G|942
4W29|1|AA|U|943
4W29|1|AA|G|944
4W29|1|AA|G|945
4W29|1|AA|A|946
*
4W29|1|AA|U|1235
4W29|1|AA|A|1236
4W29|1|AA|C|1237
*
4W29|1|AA|G|1337
4W29|1|AA|G|1338
4W29|1|AA|A|1339
4W29|1|AA|A|1340
4W29|1|AA|U|1341

Current chains

Chain AA
16S Ribosomal RNA

Nearby chains

Chain AG
30S ribosomal protein S7
Chain AI
30S ribosomal protein S9
Chain AM
30S ribosomal protein S13
Chain AW
Transfer RNA; tRNA

Coloring options:

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