J3_4W2F_012

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2F_012 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.1507

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

4W2F|1|BA|G|1101
4W2F|1|BA|G|1102
4W2F|1|BA|A|1103
*
4W2F|1|BA|U|1127
4W2F|1|BA|U|1128
4W2F|1|BA|U|1129
4W2F|1|BA|A|1130
4W2F|1|BA|A|1131
4W2F|1|BA|A|1132
4W2F|1|BA|G|1133
*
4W2F|1|BA|C|1148
4W2F|1|BA|A|1149
4W2F|1|BA|C|1150

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B9

50S Ribosomal Protein L36