J3_4W2F_015

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2F_015 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0444

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4W2F|1|BA|U|2113
4W2F|1|BA|U|2114
4W2F|1|BA|G|2115
*
4W2F|1|BA|C|2218
4W2F|1|BA|U|2219
4W2F|1|BA|A|2220
4W2F|1|BA|A|2221
4W2F|1|BA|C|2222
*
4W2F|1|BA|G|2235
4W2F|1|BA|G|2236
4W2F|1|BA|A|2237
4W2F|1|BA|C|2238
4W2F|1|BA|A|2239
4W2F|1|BA|G|2240

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S Ribosomal Protein L28

Chain BD

50S Ribosomal Protein L2

Chain BI

50S Ribosomal Protein L9