J3_4W2F_021

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2F_021 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0787

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4W2F|1|CA|C|936
4W2F|1|CA|A|937
4W2F|1|CA|A|938
4W2F|1|CA|G|939
*
4W2F|1|CA|C|1344
4W2F|1|CA|U|1345
4W2F|1|CA|A|1346
4W2F|1|CA|G|1347
4W2F|1|CA|U|1348
4W2F|1|CA|A|1349
4W2F|1|CA|A|1350
*
4W2F|1|CA|U|1372
4W2F|1|CA|G|1373
4W2F|1|CA|A|1374
4W2F|1|CA|A|1375
4W2F|1|CA|U|1376
4W2F|1|CA|A|1377
4W2F|1|CA|C|1378
4W2F|1|CA|G|1379

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CG

30S Ribosomal Protein S7

Chain CI

30S Ribosomal Protein S9

Chain CY

Transfer RNA; tRNA