J3_4W2F_034

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4W2F|1|DA|A|2518, 4W2F|1|DA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2F_034 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0518

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

4W2F|1|DA|C|2517
4W2F|1|DA|A|2518
4W2F|1|DA|U|2519
4W2F|1|DA|C|2520
*
4W2F|1|DA|G|2545
4W2F|1|DA|U|2546
4W2F|1|DA|U|2547
*
4W2F|1|DA|A|2561
4W2F|1|DA|U|2562
4W2F|1|DA|U|2563
4W2F|1|DA|A|2564
4W2F|1|DA|A|2565
4W2F|1|DA|A|2566
4W2F|1|DA|G|2567

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DO

50S Ribosomal Protein L14