J3_4W2F_036

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4W2F|1|AA|C|48, 4W2F|1|AA|A|50, 4W2F|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2F_036 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0757

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4W2F|1|AA|G|46
4W2F|1|AA|C|47
4W2F|1|AA|C|48
4W2F|1|AA|U|49
4W2F|1|AA|A|50
4W2F|1|AA|A|51
4W2F|1|AA|G|52
*
4W2F|1|AA|U|359
4W2F|1|AA|A|360
4W2F|1|AA|G|361
4W2F|1|AA|G|362
4W2F|1|AA|A|363
4W2F|1|AA|A|364
4W2F|1|AA|U|365
4W2F|1|AA|C|366
4W2F|1|AA|U|367
*
4W2F|1|AA|A|393
4W2F|1|AA|G|394
4W2F|1|AA|C|395

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AL

30S Ribosomal Protein S12

Chain AP

30S Ribosomal Protein S16