J3_4W2F_042

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2F_042 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.0588

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_79369.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

4W2F|1|AA|U|1073
4W2F|1|AA|G|1074
*
4W2F|1|AA|U|1083
4W2F|1|AA|G|1084
4W2F|1|AA|U|1085
4W2F|1|AA|U|1086
*
4W2F|1|AA|G|1099
4W2F|1|AA|C|1100
4W2F|1|AA|A|1101
4W2F|1|AA|A|1102

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AB

30S Ribosomal Protein S2

Chain AE

30S Ribosomal Protein S5