J3_4W2F_048

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

4W2F|1|BA|U|288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2F_048 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.1189

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4W2F|1|BA|U|258
4W2F|1|BA|A|259
4W2F|1|BA|A|260
4W2F|1|BA|A|261
4W2F|1|BA|C|262
*
4W2F|1|BA|G|282
4W2F|1|BA|G|283
4W2F|1|BA|G|284
4W2F|1|BA|U|285
4W2F|1|BA|C|286
4W2F|1|BA|G|287
4W2F|1|BA|U|288
4W2F|1|BA|G|289
*
4W2F|1|BA|C|396
4W2F|1|BA|G|397

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BI

50S Ribosomal Protein L9