J3_4W2F_054
3D structure
- PDB id
- 4W2F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CCAUAG*CG*UCG
- Length
- 11 nucleotides
- Bulged bases
- 4W2F|1|BB|U|14, 4W2F|1|BB|C|109
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4W2F_054 not in the Motif Atlas
- Homologous match to J3_9DFE_020
- Geometric discrepancy: 0.0623
- The information below is about J3_9DFE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12003.2
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
4W2F|1|BB|C|11
4W2F|1|BB|C|12
4W2F|1|BB|A|13
4W2F|1|BB|U|14
4W2F|1|BB|A|15
4W2F|1|BB|G|16
*
4W2F|1|BB|C|68
4W2F|1|BB|G|69
*
4W2F|1|BB|U|108
4W2F|1|BB|C|109
4W2F|1|BB|G|110
Current chains
- Chain BB
- 5S Ribosomal RNA
Nearby chains
- Chain B0
- 50S Ribosomal Protein L27
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BS
- 50S Ribosomal Protein L18
- Chain BZ
- 50S Ribosomal Protein L25
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