3D structure

PDB id
4W2F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
CGAAG*CGCCAGAGAG*CGUAG
Length
20 nucleotides
Bulged bases
4W2F|1|DA|G|321
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4W2F_068 not in the Motif Atlas
Homologous match to J3_9DFE_006
Geometric discrepancy: 0.0649
The information below is about J3_9DFE_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

4W2F|1|DA|C|297
4W2F|1|DA|G|298
4W2F|1|DA|A|299
4W2F|1|DA|A|300
4W2F|1|DA|G|301
*
4W2F|1|DA|C|316
4W2F|1|DA|G|317
4W2F|1|DA|C|318
4W2F|1|DA|C|319
4W2F|1|DA|A|320
4W2F|1|DA|G|321
4W2F|1|DA|A|322
4W2F|1|DA|G|323
4W2F|1|DA|A|324
4W2F|1|DA|G|325
*
4W2F|1|DA|C|337
4W2F|1|DA|G|338
4W2F|1|DA|U|339
4W2F|1|DA|A|340
4W2F|1|DA|G|341

Current chains

Chain DA
23S Ribosomal RNA

Nearby chains

Chain DF
50S Ribosomal Protein L4
Chain DY
50S Ribosomal Protein L24

Coloring options:


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