3D structure

PDB id
4W2G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
UUG*CUAAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4W2G_013 not in the Motif Atlas
Homologous match to J3_7RQB_010
Geometric discrepancy: 0.0439
The information below is about J3_7RQB_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_89368.3
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

4W2G|1|BA|U|2113
4W2G|1|BA|U|2114
4W2G|1|BA|G|2115
*
4W2G|1|BA|C|2218
4W2G|1|BA|U|2219
4W2G|1|BA|A|2220
4W2G|1|BA|A|2221
4W2G|1|BA|C|2222
*
4W2G|1|BA|G|2235
4W2G|1|BA|G|2236
4W2G|1|BA|A|2237
4W2G|1|BA|C|2238
4W2G|1|BA|A|2239
4W2G|1|BA|G|2240

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain B1
50S Ribosomal Protein L28
Chain BD
50S Ribosomal Protein L2
Chain BI
50S Ribosomal Protein L9

Coloring options:


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